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Workflow to Split, Filter, Normalize and Integrate Sequencing Data

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 13 Jul 2023Publisher:Zenodo
Authors: Reichl, Stephan; Bock, Christoph;
Code repository: https://github.com/epigen/spilterlize_integrate/tree/v3.0.3

doi: 10.5281/zenodo.17194561 , 10.5281/zenodo.14887959 , 10.5281/zenodo.13754649 , 10.5281/zenodo.15808260 , 10.5281/zenodo.17200057 , 10.5281/zenodo.14893316 , 10.5281/zenodo.8144219 , 10.5281/zenodo.14536761 , 10.5281/zenodo.15528365 , 10.5281/zenodo.12706044 , 10.5281/zenodo.18188218 , 10.5281/zenodo.11242080 , 10.5281/zenodo.18199217 , 10.5281/zenodo.17201609 , 10.5281/zenodo.8144220

Workflow to Split, Filter, Normalize and Integrate Sequencing Data

Abstract

A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq,...) including diagnostic visualizations.

If you use this software, please cite it using the metadata from this file.

Related Organizations
Keywords

FOS: Computer and information sciences, Normalization, Bioinformatics, Integration, Processing, Workflow, Snakemake

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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