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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Pharokka Database v1.8.0

Research datakeyboard_double_arrow_right Dataset 13 Sep 2025Publisher:Zenodo
Authors: Bouras, George;

doi: 10.5281/zenodo.8267899 , 10.5281/zenodo.17110353 , 10.5281/zenodo.17110247

Pharokka Database v1.8.0

Abstract

This holds the databases for Pharokka v1.8.0 (https://github.com/gbouras13/pharokka). It includes the PHROGs profile database made with MMSeqs2 (v18.8cc5c) and PHROGs HMM database made with Pyhmmer (v0.9.0 - .h3m file of all 38880 PHROGs), along with MMseqs2 compatible versions of the CARD v3.2.7 and VFDB (as of August 18 2023) databases. The VFDB database has been clustered using MMSeqs2 at 50% sequence identity to reduce its size and speed up Pharokka's runtime. `mmseqs easy-cluster VFDB_setB_pro_form.fas VFDBclusterRes tmp --min-seq-id 0.5 -c 0.8 --cov-mode 1` It also includes the INPHARED mash sketch and annotation file current as of 9 August 2025 (https://github.com/RyanCook94/inphared https://millardlab.org/bacteriophage-genomics/phage-genomes-aug-2025/). 

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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