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Python tool for analyzing Electrochemical Impedance Spectroscopy data using CPE-based equivalent circuit model for tissue barriers

Authors: Marrero, Denise;

Python tool for analyzing Electrochemical Impedance Spectroscopy data using CPE-based equivalent circuit model for tissue barriers

Abstract

This repository provides Python scripts for processing and analyzing electrical impedance spectroscopy (EIS) data in the context of organ-on-chip applications. It includes two main tools:(1) loading and structuring .z files into pandas DataFrames, and(2) nonlinear least-squares fitting of impedance spectra to an equivalent electrical circuit model composed of a constant phase element (CPE, defined by capacitance and exponent α) in parallel with a resistance (RTEER), in series with an additional resistor (Rs). The repository also contains example EIS data from an organ-on-chip system where primary lung cells were cultured for six days and their bioelectrical properties monitored in real time. The scripts generate fitted parameters, Bode plots comparing experimental and modeled data, and time-resolved outputs of TEER and capacitance. Example datasets and usage instructions are provided to facilitate reproducible EIS data analysis, with a particular emphasis on applications in organ-on-chip and bioelectronic systems.

Keywords

EIS, Tissue Barriers

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average