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ZENODO
Other literature type . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Other literature type . 2025
License: CC BY
Data sources: Datacite
ZENODO
Other literature type . 2025
License: CC BY
Data sources: Datacite
ResearchGate Data
Preprint . 2025
Data sources: Datacite
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Digitizing and Structuring Early Marine Biodiversity Records: A GraphRAG-Based Methodology

Authors: Nuñez, Gustavo; Zarate, Marcos; Ceballos, Dario; Fillottrani, Pablo;

Digitizing and Structuring Early Marine Biodiversity Records: A GraphRAG-Based Methodology

Abstract

This work presents a method for generating and refining a knowledge graph (KG) from a historically significant 20th-century marine biology text. The source, a foundational ecological survey, was digitized using OCR and processed for semantic consistency. Knowledge extraction was performed with GraphRAG and the GPT-4o-mini model, producing an initial KG with verbose and inconsistent relationships. To improve clarity and alignment with semantic web standards, a two-step refinement process was applied, combining automated tuning and prompt engineering. The result was a set of concise, RDF-style predicates suitable for querying and integration with ontological frameworks. The refined KG is accessible via a public platform supporting multilingual natural language queries, enabling broader use of historical ecological data. This approach highlights the potential of AI-assisted pipelines to transform legacy scientific texts into semantically structured, interoperable resources for biodiversity research.

Keywords

Large Language Models, Open Knowledge Graphs, GraphRAG, Natural Language Queries, Digital Knowledge Preservation

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
Related to Research communities
Italian National Biodiversity Future Center