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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Halo8: a dataset of chemical reaction pathways incorporating halogen chemistry

Authors: Lee, Minhyeok;

Halo8: a dataset of chemical reaction pathways incorporating halogen chemistry

Abstract

# Halo8 Database Halo8 is a ASE-based database containing total 20,116,288 structures, each with properties computed by DFT. You can directly access the common properties below with the following code: CoordinatesEnergyForce ```pythonfrom ase.db import connect db_path = 'your/path/to/db' with connect(db_path) as db: for row in db.select(): atoms = row.toatoms() coords = atoms.get_positions() # Coordinates energy = atoms.get_potential_energy() # Energy forces = atoms.get_forces() # Force``` All of the extra properties below are stored in row.data and can be accessed by their keys: dand_idHOMO_idxHOMO_levelLUMO_idxLUMO_levelMulliken_chargesLowdin_chargesDipole_momentNuclear_repulsion_energyElectronic_energyOne_electron_energyTwo_electron_energyExchange_energyCorrelation_energyDispersion_correction ```python from ase.db import connect db_path = 'your/path/to/db' with connect(db_path) as db: for row in db.select(): your_property = row.data['keys_for_property'] ``` The dand_id field follows the format: [Source]_[Formula]_rxn[XXXXX]_[Y] Source: T1x (reactions from the Transition1x dataset) or Halogen (newly added halogen-containing reactions) Formula: chemical formula of the system rxnXXXXX: reaction index number Y: structure index within a given reaction Each reaction pathway consists of 10 images in total: 1 reactant (Y=0), 8 intermediate NEB images, and 1 product (Y=9). The final block of 8 intermediates plus the fixed endpoints form the converged MEP. For example, if the Y indices for a reaction are: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 .... 178 179 180 181 182 183 184 185 The converged MEP of this example is: 0 → 178 → 179 → 180 → 181 → 182 → 183 → 184 → 185 → 9 (10 images total) The initial interpolation path (Y=1-8) and subsequent NEB optimization cycles (Y=10-17, 18-25, ...) are not part of the final pathway. The highest-energy image along the final MEP corresponds to the transition state. Note that all geometries are optimized at the GFN2-xTB level and should not be interpreted as DFT-level stationary points.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average