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ZENODO
Dataset . 2025
Data sources: ZENODO
ZENODO
Dataset . 2025
Data sources: Datacite
ZENODO
Dataset . 2025
Data sources: Datacite
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Performance of universal machine-learned potentials with explicit long-range interactions in biomolecular simulations: Datasets and models

Authors: Zaverkin, Viktor; Ferraz, Matheus; Alesiani, Francesco; Niepert, Mathias;

Performance of universal machine-learned potentials with explicit long-range interactions in biomolecular simulations: Datasets and models

Abstract

Description of datasets This repository provides train/validation/test splits of atomistic datasets used to train and evaluate ICTP (Irreducible Cartesian Tensor Potential) models for molecular and biomolecular simulations. Each structure includes: Atomic positions in Å Total energies in eV Atomic forces in eV/Å Total charges in units of e These quantities were used directly for training and evaluating ICTP models. These datasets are largely based on SPICE-v2 and are derived from first-principles reference calculations. A detailed description of dataset curation, reference level of theory, and evaluation is provided in the accompanying paper: Performance of universal machine-learned potentials with explicit long-range interactions in biomolecular simulations Description of models All models used in the experiments are ICTP models, including: ICTP-LR(S), ICTP-LR(M), ICTP-LR(L) (with explicit long-range electrostatics and dispersion) ICTP-SR(M) (short-range model) Examples for training ICTP models with the curated datasets are provided in the official ICTP repository: https://github.com/nec-research/ictp/blob/main/examples/run_training_SPICE.py Examples for running molecular dynamics simulations with trained ICTP models (including input geometries) are available at: https://github.com/nec-research/ictp/tree/main/examples/dimos Please cite the preprint in any work that uses these datasets or ICTP models with explicit long-range electrostatics and dispersion if you find them useful.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average