Virtual Reference Environment (VRE) for the project: Bond Graph Modelling of Chemiosmotic Biomolecular Energy Transduction The corresponding publication is at https://arxiv.org/a/gawthrop_p_1.html The file vre.iso is a bootable iso image. This can be used to boot a virtual machine such as virtualbox. Double-click the icon 'run_experiments.sh' and select 'Execute in Terminal' to reproduce the results of the paper. The results appear in Examples/vre_out.pdf The file vre_out.pdf is the expected VRE output. mtt and xmtt are made available by typing: source ~/Examples/mtt/bin/mttrc ~/Examples/mtt Type 'mtt --versions' to check. Type 'mtt' for more information Type 'mtt manual' for too much information Type 'xmtt&' for a GUI to mtt The file vre_examples.tgz contains the sources. General bond graph information is at http://www.gawthrop.net/BondGraphs/ Virtual Reference Environments are described by: Daniel G. Hurley, David M. Budden, and Edmund J. Crampin. Virtual reference environments: a simple way to make research reproducible. Briefings in Bioinformatics, 2014. doi:10.1093/bib/bbu043.