PR #1202: mdtraj.html has been removed. We recommend using nglview for visualizing MDTraj trajectory objects. PR #1204: Fix search functionality with docs PR #1167: Fix corner case in distancekernel.h PR #1190: Fix issue with rmsd precentered = True and atom_indices != None PR #1106: Speed up image_molecules PR #1182: Add 'sidechain' and 'sidechain-heavy' options to compute_contacts PR #1180: Handle unexpected keyword arguments gracefully in psf and prmtop parsers PR #1171: Remove unnecessary restriction on iterload PR #1170: Load single-element path lists without a copy PR #1165: There should never be zero bins in Voxels class PR #1158: Update deprecated use of scipy.stats.nanmean PR #1153: [formats/XTC] in case of an out of bounds seek, raise IOError PR #1161: Fix typos in examples PR #1130: Automatically test examples to make sure they work PR #1155: Update wording for simulation-with-openmm.ipynb PR #1146: Ensure box vectors have right dtype PR #1145: Check that file exists before trying to open it PR #1139: Optimize baker_hubbard and wernet_nilsson functions PR #1137: Allow standard_names as a keyword argument to md.load() PR #1132: Fix bug in hoomdxml reader PR #1125: Support Gromacs TNG files PR #1123: Add md.join(trajs)