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doi: 10.5281/zenodo.16542
This is a collection of shell and perl scripts for quantifying MCMC (Markov chain Monte Carlo) exploration of subtree prune-and-regraft tree space in MrBayes posteriors. For more information see: Chris Whidden and Frederick A. Matsen IV. (2015). Quantifying MCMC Exploration of Phylogenetic Tree Space. Systematic Biology. First published online: January 27, 2015. doi:10.1093/sysbio/syv006 . This version includes some bug fixes but was mostly released to generate a DOI via Zenodo.
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