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Software . 2025
License: CC BY
Data sources: Datacite
ZENODO
Software . 2025
License: CC BY
Data sources: Datacite
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Protocol workflow for manuscript 'A novel protocol for exploratory analysis of unknown sound-types in large acoustic datasets'

Authors: Turlington, Katie; Suarez Castro, Andres Felipe; Teixeira, Daniella; Linke, Simon; Sheldon, Fran;

Protocol workflow for manuscript 'A novel protocol for exploratory analysis of unknown sound-types in large acoustic datasets'

Abstract

This repository contains the R code associated with the publication "A novel protocol for exploratory analysis of unknown sound-types in large acoustic datasets", published in Methods in Ecology and Evolution. The code implements a semi-automated protocol for clustering environmental sound events using beta acoustic indices and kmeans clustering. While the published example focuses on underwater recordings from river ecosystems, the protocol is broadly applicable to ecoacoustic data from any ecosystem type and is scalable to datasets of most sizes. The scripts include functions for calculating acoustic indices, generating dissimilarity matrices, performing clustering, evaluating cluster validity, and optionally sampling sound events for manual review. A sample dataset is included for demonstration.

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Keywords

bioacoustics, ecoacoustics, acoustic indices, clustering algorithms, exploratory acoustic analysis, unsupervised learning, beta acoustic indices, soundscape analysis

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average