Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

TRcompDB v2.0, a global reference of human tandem repeat composition and mutation rate from long-read assemblies

Authors: Gu, Bida; Chaisson, Mark;

TRcompDB v2.0, a global reference of human tandem repeat composition and mutation rate from long-read assemblies

Abstract

The following motif catalogs are provided. Including the vamos genomic catalog expanded by TRExplore v1.0 (4,422,661 loci) for GRCh38 the vamos genomic catalog for CHM13 (1,175,989 loci) the vamos genomic catalog expanded by TRExplore v1.0 (4,155,246 loci) for CHM13 the curated functional catalog for GRCh38 (72 loci) All motif catalogs are generated under the v3.0 infrastructure of the catalog construction pipeline. “oriMotifs” stands for the full motif set before efficient motif selection. “effMotifs-0.1” stands for the efficient motifs selected under q=0.1. TR annotations are provided as combined vcf for 416 publicly available diploid long-read assemblies. Locus-specific ANOVAs by allelic length or compositions are provided in "anova.annoLen.tsv.gz" and "anova.ed2Major.tsv.gz". Estimated locus-specific mutation rates for GRCh38 are provided in a master table with locus features (mutRate_GRCh38_masterFile.tsv.gz). Columns are explained in the txt file (mutRate_GRCh38_masterFile.txt).

Related Organizations
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Top 10%
Average
Average