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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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AlphaFold 3 predictions of diubiquitin complexes using cysteine mutants and bonded linkers

Research datakeyboard_double_arrow_right Dataset 27 May 2025Publisher:Zenodo
Authors: Fábián, Balázs; Stuke, Jan Felix Maximilian;

doi: 10.5281/zenodo.15527032 , 10.5281/zenodo.16259728 , 10.5281/zenodo.15527033

AlphaFold 3 predictions of diubiquitin complexes using cysteine mutants and bonded linkers

Abstract

Alphafold 3 predictions of PDB structures* 5ymy* 6isu* 6tuv* 6ud0* 7keo* 7m4n* 7uyh* 9avt* 7uv5* 8c61* 8j1pusing standard AF3 / correlated cysteine mutations / covalent linkers, as well as* structure of a branched polyUb chain* rpn1 in complex with triUb* rpn13 in complex with triUb For processing with the scripts available at https://github.com/bio-phys/polyUb-AF, the AF3 CIF files must be converted to PDBs using the 'convert_all_cif_to_pdb.sh' VMD script found in each directory. Note that it requires 'cif2pdb.vmd'.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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