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SINCLAIR: SINgle CelL AnalysIs Resource

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 25 Apr 2025Publisher:Zenodo
Authors: Sevilla, Samantha; Wong, Nathan; Sovacool, Kelly; Pehrsson, Erica; Abdelmaksoud, Abdalla; Koparde, Vishal;
Code repository: https://github.com/CCBR/SINCLAIR/tree/v0.3.4

doi: 10.5281/zenodo.15283503 , 10.5281/zenodo.16928922 , 10.5281/zenodo.16046767 , 10.5281/zenodo.15283504 , 10.5281/zenodo.15299337 , 10.5281/zenodo.17160724 , 10.5281/zenodo.15473453

SINCLAIR: SINgle CelL AnalysIs Resource

Abstract

Fix samplesheet check to allow multi-digit sample IDs. (#189, @kelly-sovacool) New parameter save_cellranger_extra_files to control whether to save extra cellranger output files (bam, bai, cloupe) in addition to h5 files. Default is false to save space. (#195, @kelly-sovacool) New largemem profile for memory-intensive processes. (#196, @kelly-sovacool) Documentation updates Major improvements to the docs website. (#160, @bianjh-cloud) Fix rendering of bulleted lists in docs website. (#164, @kelly-sovacool) Documentation for test data outputs updated. (#174, @wong-nw) Minor documentation improvements (#175, @wong-nw) Update test-info.md to reflect change in directory naming (#190, @wong-nw) Other minor changes Re-ordering of batch correction report. (#174 @wong-nw) Rename 'output' directory to 'results' for the nextflow workflow. (#186, @kelly-sovacool)

Please cite SINCLAIR as below:

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    Impact byBIP!
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    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average