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Article . 2025
License: CC BY SA
Data sources: ZENODO
ZENODO
Article . 2025
License: CC BY SA
Data sources: Datacite
ZENODO
Article . 2025
License: CC BY SA
Data sources: Datacite
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Novel Amide Functionalized Pyrimidine Derivative as Potential Anticancer Agents: Synthesis, Characterization, Molecular Docking and Invitro Cytotoxicity Evaluation

Authors: K. Jyothi* and M. Kannadasan;

Novel Amide Functionalized Pyrimidine Derivative as Potential Anticancer Agents: Synthesis, Characterization, Molecular Docking and Invitro Cytotoxicity Evaluation

Abstract

A series of amide-functionalized pyrimidine derivatives (6a–6r) were synthesized via a three-steproute involving (1) multicomponent assembly of 2-(4-methylpyrimidin-5-yl) acetonitrile (4), (2)LiAlH₄ reduction to the primary amine (5), and (3) DCC/DMAP-mediated coupling with diversecarboxylic acids. The compounds were obtained in good yields (65–92%) and high purity (>95%,NMR/HRMS). Molecular docking studies against EGFR (PDB: 6LUD) and CDK-4 (PDB: 7SJ3) revealedstrong binding affinities for hydroxy-substituted derivatives, particularly 6k (EGFR: −7.245kcal/mol), 6j (CDK-4: −8.72 kcal/mol), and 6l (CDK-4: −9.23 kcal/mol), highlighting the role ofhydrogen-bonding interactions. Cytotoxicity screening (MTT assay) against A-549 (lung), HCT-116(colorectal), PANC-1 (pancreatic), and HaLa (cervical) cancer cells identified 6l (2-hydroxy-4-methoxyphenyl) as the most potent inhibitor (IC₅₀ = 5.87–7.86 μM), with 3–7-fold selectivity overnormal HEK-293 cells. Structure-activity relationships demonstrated that electron-donatinghydroxy/methoxy groups enhanced activity, while nitro or bulky substituents reduced potency.Notably, 6j (3,4-dihydroxyphenyl) exhibited exceptional activity against HCT-116 (IC₅₀ = 5.67 μM),correlating with its high CDK-4 binding affinity. The combined in silico and in vitro results suggestthat these pyrimidine hybrids act via dual EGFR/CDK-4 inhibition, with 6b, 6j, and 6l emerging aspromising anticancer leads due to their potent cytotoxicity, kinase selectivity, and favorable safetyprofiles. This study provides a robust framework for further optimization of pyrimidine-basedtherapeutics.KeywordsPyrimidine derivatives, Multicomponent synthesis, EGFR, CDK-4, Molecular docking, Anticanceractivity.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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Average
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