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Dataset . 2025
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ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
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Dataset . 2024
License: CC BY
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Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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The CRyPTIC Consortium Dataset

Authors: The CRyPTIC Consortium; Fowler, Philip;

The CRyPTIC Consortium Dataset

Abstract

This dataset is the first of a new release of the data collected and collated by the CRyPTIC Consortium. All the raw genetics (FASTQ) files have been processed using a Mycobacterial pipeline as implemented in an online cloud platform. Whilst the bioinformatics components are similar (e.g. Clockwork remains the variant caller), there are some differences. This version includes all samples for which we expect to have WGS and pDST data. It is incomplete as About 1000 samples failed the upload process There are other samples that are missing These issues are fixed in later releases. We therefore do not recommend usage of this version -- it is recorded here for completeness. Due to the size of some of the data tables, the larger ones are stored as PyArrow parquet files. These can be e.g. loaded using pandas but one ordinarily needs to first install pyarrow using pip.

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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Related to Research communities