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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Genomics NCD-gzip database

Authors: EESI lab;

Genomics NCD-gzip database

Abstract

This is a basic database consisting of 4634 genomes sampled from the RefSeq database using the Woltka pipelin. It is intended for testing and evaluation of metagenomic classification tools. Contents The genome sequences are provided in a compressed archive (genomes.tar.gz). When unpacked, the folder structure is organized by NCBI Taxonomy ID (taxid), like so: genomes/├── taxid1/│ ├── genome1_0.fna│ └── genome1_1.fna├── taxid2/│ └── genome2_0.fna├── taxid3/│ ├── genome3_0.fna│ ├── genome3_1.fna│ └── genome3_2.fna Each top-level directory corresponds to a taxonomic ID and contains one or more genome FASTA files in .fna format. Additional Files fold1_list.txt and fold1_testing_list.txt: Lists of genome TaxIDs used for training and testing, respectively. These are included to support reproducible benchmarking of metagenomic classifiers.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average