This compressed tarball contains an R Markdown file and R scripts and datasets that when executed (knitted) in RStudio will reproducibly create all the main figures in the paper Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana [except Fig1 (composite) and Fig 12 (manually created)], and perform the correlation and modelling analyses presented in the paper.