MaelLefeuvre/pmd-mask: pmd-mask v0.3.1
MaelLefeuvre/pmd-mask: pmd-mask v0.3.1
What's changed Fixes issue #13 : pmd-mask now correctly handles out of index errors when attempting to retrieve positions that lie beyond the chromosome's length. A ReferenceOutOfIndex error is emmitted if and only if the read happens to not be labeled as 'segment unmapped' (0x4). Temporary workaround to issue #15 : The current patch directly uses libc::free to manually clean up memory between each iteration. A more elegant solution may come in the future. Use of atty ensures users are actually feeding the program with an input using piping, when they did not use --bam argument. This ensures a comprehensive error message gets printed, instead of letting the program endlessly hanging. Improved error handling:
Deamination/genetics, Sequence Analysis, DNA/methods, Electronic Data Processing/methods, DNA, Ancient/analysis
Deamination/genetics, Sequence Analysis, DNA/methods, Electronic Data Processing/methods, DNA, Ancient/analysis
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