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A Command Line Interface for NDPI Format Image Tile Cropping

paleopollen/ndpi-tile-cropper-cli: v1.0.0
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 16 Dec 2024Publisher:Zenodo
Authors: Puthanveetil Satheesan, Sandeep; Feng, Jennifer; Kong, Shu; Punyasena, Surangi;
Code repository: https://github.com/paleopollen/ndpi-tile-cropper-cli/tree/v1.0.0

doi: 10.5281/zenodo.14502306 , 10.5281/zenodo.14502307 , 10.5281/zenodo.15264408

A Command Line Interface for NDPI Format Image Tile Cropping

Abstract

We present NDPI Tile Cropper, a Command Line Interface (CLI) to read Hamamatsu NanoZoomer Digital Pathology Image (NDPI) format files and generate cropped image tiles at all available focal points. This CLI is developed based on Deep Learning and Pollen Detection in the Open World notebooks (https://github.com/fengzard/open_world_pollen_detection) authored by Jennifer T. Feng, Shu Kong, Timme H. Donders, and Surangi W. Punyasena.

If you use this software, please cite it using the metadata from this file.

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Keywords

Tile Cropping, Microscopy, Palynology, NDPI

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average