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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins

Research datakeyboard_double_arrow_right Dataset 15 Apr 2025Publisher:Zenodo
Authors: Barbensi, Agnese; Klotz, Alex; Goundaroulis, Dimos;

doi: 10.5281/zenodo.15220262 , 10.5281/zenodo.15220263

Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins

Abstract

This repository contains code and data for the Kremer-Grest polymers and Growing Walk Model topological simulations from the paper "Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins". Knoto-ID is a crucial dependency for our computations. You can either compile it from source or download a pre-built executable from its GitHub repository

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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