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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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RPE1-CRISPRa-TFs

Authors: Southard, Kaden; Ardy, Rico Chandra; Tang, Anran; O'Sullivan, Deirdre; Metzner, Eli; Guruvayurappan, Karthik; Norman, Thomas;

RPE1-CRISPRa-TFs

Abstract

Processed dataset of all transcription factor CRISPRa perturbations within RPE-1 cells from: Comprehensive transcription factor perturbations recapitulate fibroblast transcriptional states Southard KM, Ardy RC, Tang A, O'Sullivan DD, Metzner E, Guruvayurappan K, Norman TM. Comprehensive transcription factor perturbations recapitulate fibroblast transcriptional states. bioRxiv [Preprint]. 2024 Aug 3:2024.07.31.606073. doi: 10.1101/2024.07.31.606073. PMID: 39131349; PMCID: PMC11312553. in press at Nature Genetics Raw fastq files available at SRA: PRJNA1108254 This record contains aggregated, quality control filtered, and processed outputs downstream of cellranger including. 1) guide umis per cell: RPE1_CRISPRa_aggr_total_guide_umis.h5 2) final qc filtered population with multiplets: RPE1_CRISPRa_final_population.h5ad 3) filtered singlets, processed with scanpy.pp.normalized_total and scanpy.pp.log1p. Raw counts saved in layer['counts']: RPE1_CRISPRa_final_population_singlets_normalized_log1p.h5ad 4) "mean" population constructed from the full regression model from overloaded droplets: RPE1_CRISPRa_mean_pop.h5ad

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average