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The piscem index

descriptionPublicationkeyboard_double_arrow_right Research , Other literature type 27 Mar 2025Publisher:Zenodo

Authors: Patro, Rob; Khan, Jamshed; Pibiri, Giulio Ermanno; Singh, Noor Pratap;

doi: 10.5281/zenodo.15096902 , 10.5281/zenodo.15096903

The piscem index

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Abstract

This manuscript provides a brief overview of the piscem index — a fast and compact index for the compacted, colored, reference (i.e., storing positional information about the input references) de Bruijn graph — which is used across several tools, but for which a complete manuscript is still in preparation. This document is meant to act as an informative technical description of the main index and its features.

Related Organizations

University of Maryland, College Park
United States
Ca Foscari University of Venice
Italy

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