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Synthetic Data from: Generative and Integrative Modeling for Transcriptomics with Formalin Fixed Paraffin Embedded Material

Name: Synthetic Data from: Generative and Integrative Modeling for Transcriptomics with Formalin Fixed Paraffin Embedded Material
Keywords: generative modeling, formalin fixed paraffin embedded, RNA-Seq, graph attention networks

Research datakeyboard_double_arrow_right Dataset 24 Mar 2025 English Publisher:Zenodo

Authors: Mucaki, Eliseos; Hallett, Michael;

doi: 10.5281/zenodo.15079532 , 10.5281/zenodo.15079531

Synthetic Data from: Generative and Integrative Modeling for Transcriptomics with Formalin Fixed Paraffin Embedded Material

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Abstract

This repository contains all synthetic datasets used in the manuscript, "Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material", currently published on BioRxiv: https://www.biorxiv.org/content/10.1101/2025.02.21.639356v1 The datasets consist of AnnData files designed to be used by the PREFFECT (PaRaffin Embedded Formalin-FixEd Cleaning Tool, a probabilistic framework for the analysis of RNA sequencing data from formalin-fixed paraffin embedded (FFPE) samples. This software can be found on GitHub here: https://github.com/hallettmiket/preffect/ Details of the various AnnData files provided in this repository is given in the 'ReadMe.rtf' file.

Related Organizations

Western University
Canada

Keywords

generative modeling, formalin fixed paraffin embedded, RNA-Seq, graph attention networks

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