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Other literature type . 2025
License: CC BY
Data sources: Datacite
ZENODO
Other literature type . 2025
License: CC BY
Data sources: Datacite
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GROQ-seq Platform Expansion: Design of growth-coupled measurements of T7 RNA Polymerase

Authors: Cortade, Dana; Kelly, Pete; Booth, Justin; Comerford, Ragnor; Nematollahi, Lily; DeBenedictis, Erika;

GROQ-seq Platform Expansion: Design of growth-coupled measurements of T7 RNA Polymerase

Abstract

T7 RNA polymerase (T7 RNAP) is a cornerstone of synthetic biology and is widely used for high-specificity transcription. However, despite its widespread use, predicting how its sequence variations influence function remains challenging, limiting its full potential in bioengineering applications. We propose to apply growth-based assays to systematically investigate the sequence-function relationship of T7 RNAP and develop predictive models. We will onboard a T7 RNAP circuit to the newly named growth-based quantitative sequencing (GROQ-seq) platform using a set of calibration variants that span the desired dynamic range. We will use this assay to study the relationship between polymerase sequence and promoter specificity, generating a dataset that will enable precise protein engineering for synthetic biology applications such as mRNA therapeutics and biosensors.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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Average
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Average
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