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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Image Data for: Shape Space Explorer: Analysis of morphological transitions in migrating cells using similarity-based shape space mapping

Authors: Straube, Anne; Cooper, Laura; Jefferyes, Samuel;

Image Data for: Shape Space Explorer: Analysis of morphological transitions in migrating cells using similarity-based shape space mapping

Abstract

Cell Culture For experiment 1 and 3: Human retinal pigment epithelial (RPE1) cells immortalised with hTERT (Clontech) were grown in RPE medium (DM EM/F-12 medium containing 10% FCS, 2.3 g/l sodium bicarbonate, 2mM L-Glutamine, 100 U/ml penicillin and 100 ug/ml streptomycin) at 37 ºC, 5% CO2 in a humidified incubator. The RPE1 GLA6 cell line was generated by transfecting hTERT RPE1 cells (Clontech) with mGFP-LifeAct followed by selection with 500 ug/ml Geneticin (Invitrogen). For experiment 1, small interfering RNA oligonucleotides targeted against Kif1C (5-CCCAUGCCGUCUUUACCAU-[dC]-[dG]-3) or a scrambled control (5-GGACCUGGAGGUCUGCUGU-[dT]-[dT]-3) were transfected using Oligofectamine (Invitrogen) following manufacturer’s instructions. Cells were analysed 48 hours after transfection. Live Cell Imaging A 35mm glass-bottom dishes (Fluorodish) or 2-well chambered coverglass chambers were coated with 10 ug/ml fibronectin. The fibronectin solution was allowed to incubate for 2-12 hours, and was washed twice with ddH2O before equilibrating the chamber with RPE medium. 6000 RPE1 GLA6 cells were seeded into each dish/well and allowed to spread for 4-6 hours. Cell migration experiments were carried out in RPE growth medium in a microscope stage top incubator (Tokai Hit) heated to 37 ºC and providing 5% CO2. In each experiment, numerous fields of migrating cells were imaged every 5 min for 12 hr using a 20x objective on an Olympus Deltavision microscope (Applied Precision, LLC) using a GFP filter set (Chroma) and a Coolsnap HQ camera, controlled by Softworx (Applied Precision, LLC). Frame rate was set at imaging every 5 minutes, The resulting images acquired at every time point were 1024x1024 pixels with 322nm/pixel resolution. For experiment 1, stacks 1-45 contain times series of siKif1C cells and stacks 46-88 contain time series of siControl cells.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
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