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Test small datasets for Shiba and scShiba

Name: Test small datasets for Shiba and scShiba
Creator: Kubota, Naoto

Research datakeyboard_double_arrow_right Dataset 05 Mar 2025Publisher:Zenodo

Authors: Kubota, Naoto;

doi: 10.5281/zenodo.14976390 , 10.5281/zenodo.14976391

Test small datasets for Shiba and scShiba

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Abstract

This repository provides example inputs for Shiba, a versatile computational method for systematic identification of differential RNA splicing across platforms (https://github.com/Sika-Zheng-Lab/Shiba). test_shiba.tar.gz contains four RNA-seq bam files (Ref_1.bam, Ref_2.bam, Alt_1.bam, Alt_2.bam). Useful for testing Shiba and SnakeShiba pipelines. test_scshiba.tar.gz contains a text file that describes barcodes and corresponding clusters (Cluster-1 or Cluster-2) and STARsolo outputs. Useful for testing scShiba and SnakeScShiba pipelines.

Related Organizations

University of California, Riverside
United States

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