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ZENODO
Other literature type . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Report . 2025
License: CC BY
Data sources: Datacite
Claim

stPipe - a comprehensive tool facilitating spatial transcriptomics benchmarking

descriptionPublicationkeyboard_double_arrow_right Report , Other literature type 25 Feb 2025Publisher:Zenodo
Authors: Xu, Yang; Ritchie, Matthew;

doi: 10.5281/zenodo.14920583

stPipe - a comprehensive tool facilitating spatial transcriptomics benchmarking

Abstract

The stPipe package provides a comprehensive pipeline for preprocessing sequencing-based spatial transcriptomics data, including 10X Visium, BGI Stereo-seq, Slide-seq, and Curio-seeker.

Related Organizations
Keywords

Spatial transcriptomics

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green