Initial release of nf-core/deepvariant! 🎉 This release marks the point where the pipeline was moved from lifebit-ai/DeepVariant over to the new nf-core community, at nf-core/DeepVariant. The nf-core template was used to help ensure that the pipeline meets the standards of nf-core. In summary, the main changes are: Rebranding and renaming throughout the pipeline to nf-core Updating many parts of the pipeline config and style to meet nf-core standards Continuous integration tests with Travis CI Dependencies installed via conda Added support for BAM input as file, not just a folder Added channels to process input files Added separate processes for each of the steps in FASTA file preprocessing Use of genomes config to specify relevant reference genome files similar to igenomes Added BAM size dependent setting of memory Slightly improved documentation ...and many more minor tweaks. Thanks to everyone who has worked on this release!