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CODES Dataset: simple_ode

Authors: Janssen, Robin;

CODES Dataset: simple_ode

Abstract

Toy dataset for the CODES benchmark (https://github.com/robin-janssen/CODES-Benchmark). Five-species coupled ODE system. The system features some soft non-linear effects and does not conserve abundances. The following system of equations describes the dynamics: # Rate constants k1, k2, k3, k4 = 0.7, 0.3, 0.4, 0.2 k5, k6 = 0.25, 0.15 influx = 0.1 # Interaction terms rate1 = k1 * s1 * (1 - s1) # Logistic-like self-regulation rate2 = k2 * s2 * s3 # Simple interaction between s2 and s3 rate3 = k3 * s4 * (1 - 0.1 * s4) # Mild quadratic feedback for saturation rate4 = k4 * s5 * s2 # Interaction between s5 and s2 rate5 = k3 * s4 # Loss terms decay1 = k5 * s1 decay2 = k6 * s3 # Derivatives ds1_dt = influx + rate1 - decay1 # s1 has an external source and self-regulation ds2_dt = rate2 - 0.5 * s2 # s2 grows via interaction with s3 and has linear damping ds3_dt = -rate2 + rate5 - decay2 # s3 is consumed by s2 but replenished by s4 ds4_dt = rate3 - 0.1 * s4 # Simple growth and decay for stability ds5_dt = rate4 - 0.2 * s5 # Simple linear decay 101 timesteps in the interval [0, 10], solved with scipy.integrate.solve_ivp with the DOP853 method (atol = rtol = 1e-8). Initial conditions for each species sobol-sampled in the interval (0.1, 10). 700/100/200 train/test/val samples.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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Average
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