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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Claim

h5 matrix files from the paper: "Detecting chromosomal rearrangements in boars using Hi-C"

Research datakeyboard_double_arrow_right Dataset 11 Feb 2025Publisher:Zenodo
Authors: Burden, Frances;

doi: 10.5281/zenodo.14849644 , 10.5281/zenodo.14849645

h5 matrix files from the paper: "Detecting chromosomal rearrangements in boars using Hi-C"

Abstract

Hi-C contact matrices (h5 format) generated by HiCExplorer. The files contain the interactions of each locus in the genome with other loci. Frozen_hic_matrix.h5: This file contains the contact matrices from a control boar blood sample that had been frozen and then thawed before being used to generate a Hi-C library. Fresh_hic_matrix.h5: This file contains the contact matrices from a fresh control boar blood sample that was used to generate a Hi-C library. RT_hic_matrix.h5: This file contains the contact matrices from a blood sample from a boar with an RT, that had been frozen and then thawed before being used to generate a Hi-C library. ginteraction files: Frozen_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the frozen control. boar sample. Fresh_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the fresh control. boar sample. RT_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the frozen RT sample.

Related Organizations
Keywords

Hi-C, Chromosomal rearrangement, FISH, reciprocal translocation, Boar

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    popularity
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average