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Lattice Light-Sheet Microscopy Datasets and Workflow for Omero

Authors: Cindy Evelyn; Niall Geoghegan; Lachlan Whitehead; Pradeep Rajasekhar; Kelly Rogers;

Lattice Light-Sheet Microscopy Datasets and Workflow for Omero

Abstract

Sample data acquired using the Zeiss lattice lightsheet microscope. The images are of human red blood cells acquired in the 488 channel. This dataset is associated with the software napari-lattice, which is a plugin for napari, an n-dimensional viewer in Python. Dimensions are in the format (Time, Channel, Z, Y, X) RBC_full_one_timepoint.czi: (1, 1, 834, 300, 2048) RBC_full_time_series.czi: (3, 1, 834, 300, 2048) RBC_medium_LLSZ.czi: (5, 1, 834, 297, 279) RBC_tiny.czi: (1, 1, 834, 118, 209) Voxel sizes in z, y and x respectively: ( 0.3, 0.1449922, 0.1449922) napari-lattice can process lattice lightsheet datasets skewed in the X or Y direction, and you can also create full analysis workflows in napari. For more information: https://github.com/BioimageAnalysisCoreWEHI/napari_lattice

{"references": ["Geoghegan, N.D., Evelyn, C., Whitehead, L.W. et al. 4D analysis of malaria parasite invasion offers insights into erythrocyte membrane remodeling and parasitophorous vacuole formation. Nat Commun 12, 3620 (2021). https://doi.org/10.1038/s41467-021-23626-7"]}

Keywords

Lattice Lightsheet, red blood cells, Zeiss, Oblique Plane, napari, lattice, czi,

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average