Extracting sequencing read frequency per chromosome position from .BAM files

Name: Extracting sequencing read frequency per chromosome position from .BAM files
Creator: Winterhalter, Charles
Keywords: Read density, R, Next-generation sequencing, BAM file

Winterhalter, Charles

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ZENODO

Software . 2025

License: CC BY

Data sources: Datacite

ZENODO

Software . 2025

License: CC BY

Data sources: Datacite

Extracting sequencing read frequency per chromosome position from .BAM files

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 03 Feb 2025Embargo end date: 01 Jan 2025 English Publisher:Zenodo

Authors: Winterhalter, Charles;

doi: 10.5281/zenodo.14793121 , 10.5281/zenodo.14793122

Extracting sequencing read frequency per chromosome position from .BAM files

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Abstract

This R script extracts next-generation sequencing (NGS) read densities from .BAM files and was employed to generate read coverage plots from NGS experiments performed using Bacillus subtilis as model organism.

Related Organizations

Newcastle University
United Kingdom

Keywords

Read density, R, Next-generation sequencing, BAM file

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