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napari-ndev: a generalizable start-to-finish napari plugin for batch bioimage processing and analysis without code

Authors: Monko, Timothy; Bastian, Thomas;

napari-ndev: a generalizable start-to-finish napari plugin for batch bioimage processing and analysis without code

Abstract

A collection of widgets intended to serve any person seeking to process microscopy images from start to finish, with no coding necessary. napari-ndev was designed to address the gap between the napari viewer and batch python scripting. Accepts diverse image formats, dimensionality, file size, and maintains key metadata. Allows advanced, arbitrary image processing workflows to be used by novices. User-friendly sparse annotation and batch training of machine learning classifiers. Flexible label measurements, parsing of metadata, and summarization for easily readable datasets. Designed for ease of use, modification, and reproducibility.

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Keywords

napari, microscopy, bioimage analysis

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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average