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MPAS-Dev/compass: v1.1.0

Authors: Xylar Asay-Davis; Matt Hoffman; Carolyn Begeman; Mark Petersen; Trevor Hillebrand; Holly Han; Andrew Nolan; +21 Authors

MPAS-Dev/compass: v1.1.0

Abstract

A minor release that adds spack support for building libraries, including Albany, NetLib LAPACK and PETSc. This release also include numerous new tests. Major enhancements Add a customized config parser #344 Add Greenland mesh generation test case #351 Switch to building system libraries with Spack #353 Add calving law tests for Humboldt test group #318 Add the Antarctic mesh creation within the landice core #324 Add drying slope case #352 Add Kangerlussuaq test group and mesh generation test case #385 Add koge bugt s test group #388 MALI calving dt convergence tests #386 Add tests for spherical harmonic transforms #348 Add PETSc and Netlib-LAPACK to Spack #392 Add single layer drying slope case #370 Add hurricane cases from legacy compass #390 Minor enhancements Update MALI-Dev submodule #333 Set path to MPAS model relative to root of git branch #362 Print runtime for tests as suite runs #369 Optionally build load scripts for multiple compilers/MPIs at the same time #379 Write out a job script for suite and test cases during setup #376 Add utility for matrix builds #373 Update E3SM-Project to E3SM/master #383 Optionally run steps as subprocesses #401 Update E3SM-Project to current master #416 Bug fixes Fix version import in compass load package #375 Fix missing output for daily stats test #382 Fix config section name for humboldt_mesh #384 Ignore fill values during variable validation #395 Remove extra check_call #400 Rename job script template #412 Fix calls to logger.exception() not in except block #418 Add .nml files to python package #419 Clean up Add error check for cores not set #355 Automatically get cores_per_node on single node #357 Update MALI submodule & adjust EISMINT2 test case #358 Change test cases to run like suites #350 Set OPENMP=true in load script by default #364 Switch CompassConfigParser to descend from MpasConfigParser #365 Create basic config for an MPAS core #378 Simplify output from config compass and load script #380 Update default thwaites high_res_mesh config options #387 Remove hyphens from some global ocean attributes #394 Remove redundant default argument values #403 Remove all occurrences of "max_disk" #405 Deployment Update to scorpio 1.3.2 #359 Fix a typo in error message in env setup #36 Disable timing in scorpio build #367 Skip permissions update if not needed #371 Don't remove esmf from conda environment #372 A few deployment fixes #381 Constrain mache version exactly #391 Add cfchecker and udunits2 to conda environment #393 Add a flag to prevent the compass package from being reinstalled with the load script #396 Constrain mamba to avoid recent issue #404 Fix automatic choice of compiler and MPI for OSX #409 Documentation Fix how docs detects compass version #349 Many fixes to the documentation #389 Switch docs language to English #407 Continuous integration Fix docs deployment on tag #356 Contributors Thank you very much to all the contributors (both developers and reviewers)! Developers @altheaden @cbegeman @hollyhan @matthewhoffman @sbrus89 @trhille @xylar Reviewers @mark-petersen

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