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ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Human Diversity Reference (DivRef)

Authors: Poterba, Timothy; Watkins, James; Tiao, Grace; E9 Genomics;

Human Diversity Reference (DivRef)

Abstract

Human diversity reference (DivRef) bundleThis resource bundle contains a custom human diversity reference (DivRef) composed of short base sequences around common variation in the human population, with a tool for remapping coordinates from this custom reference back to GRCh38.DivRef is constructed by computing empirical phased haplotypes within 25 BPs over 0.5% allele frequency from the Human Genome Diversity Panel (HGDP) using the phased Hail dataset provided by the gnomAD team at the Broad Institute, merged with single variants over 0.5% AF from the gnomAD v4.1.0 summary release. The base context including and surrounding these variants and haplotypes is generated from the GRCh38 reference sequence, and each variant and haplotype is exported to a FASTA file.These FASTA files are intended to be used with tools for guide design and off-target nomination that already accept reference sequences as FASTA files. The haplotype-only version of the resource contains 1,795,661 sequences overlapping 2+ variants. The gnomAD + HGDP merge contains 36,343,619 sequences including single variants and haplotypes. From the team at E9 Genomics.

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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average