<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

Multiple sequence alignment of 1,870,492 SARS-CoV-2 genomes assembled by the Viridian project

Name: Multiple sequence alignment of 1,870,492 SARS-CoV-2 genomes assembled by the Viridian project
Creator: Salson, Mikaël

Research datakeyboard_double_arrow_right Dataset 20 Jan 2025Publisher:Zenodo

Authors: Salson, Mikaël;

doi: 10.5281/zenodo.14698858 , 10.5281/zenodo.14698859

Multiple sequence alignment of 1,870,492 SARS-CoV-2 genomes assembled by the Viridian project

- Summary
- Metrics

Abstract

The assembled genomes were obtained from the publication by Hunt et al (10.1101/2024.04.29.591666). They were filtered to remove sequences with at least 100 non-ACGT nucleotides or with at least two consecutive Ns (except at the ends). The unaligned filtered sequences are available at https://zenodo.org/records/14698684. The 1,870,492 remaining sequences were then aligned using Halign3 (10.1093/molbev/msac166), taking 1.2TB of RAM. The computation was performed on the IFB Core cluster managed by the Institut Français de Bioinformatique.

Related Organizations

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

Found an issue? Give us feedback

Average

Related to Research communities

Corona Virus Disease