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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Mapping spatially-resolved transcriptomes in systemic sclerosis

Authors: Li, Zhijian;

Mapping spatially-resolved transcriptomes in systemic sclerosis

Abstract

Systemic sclerosis (SSc) is a prototypical fibrotic disease with high mortality and limited treatment options. Despite advances in single-cell RNA sequencing (scRNA-seq) providing deep understanding of cellular heterogeneity, their interaction within the fibrogenesis microenvironment remains elusive. We here generated spatially resolved transcriptome maps from healthy and SSc skin to address these limitations. We built a scRNA-seq atlas of human skin and mapped the data to spatial space, enabling us to identify a fibrotic niche, enriched with fibroblasts and macrophages, that is significantly expanded in SSc and correlated with clinical outcome. We identified SSs-specific cell states of fibroblasts, macrophages, and endothelial cells, and evaluated their spatial dependency on each other. We identified CXCL12/ACKR3/CXCR4 as a regulatory axis in shifting from homeostatic to fibrotic state in SSc, highlighting its role in endothelial-macrophage-fibroblast interplay. Together, we provided an in-depth description at cellular and spatial level of colocalization events occurring in SSc, offering spatiotemporal insights.

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average