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This dataset contains predictions of Virtual ChIP-seq for binding of 36 transcription factors in Roadmap Epigenomics dataset tissues with matched DNase-seq and RNA-seq data. Tarball contains subfolders for each of the 36 TFs where Virtual ChIP-seq median MCC in validation cell types was > 0.3. Each subfolder contains gzipped BED files. Each file is named as <Tissue>_<Age>_<TF>_<Accession>_Predictions.bed.gz. Columns correspond to Chromosome, Start, End, <Tissue>_<Age>_<TF>_<Accession>, Posterior probability You can use the posterior probabilities provided in Virchip_PosteriorCutoffs_V3.0.0.tsv. These are posterior probability cutoffs which maximized MCC in H1-hESC cell type, or are set to 0.4 if there was no ChIP-seq data of that TF in H1-hESC (0.4 is the mode of all optimal posterior probability cutoffs in H1-hESC).
Virtual ChIP-seq
Virtual ChIP-seq
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 1 | |
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| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
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