These files include the source code and related annotation and pathway data files that can be used to run iDEP (http://ge-lab.org/idep) locally. These files are current as of October 10, 2018, just before the publication of the paper on BMC Bioinformatics. The most recent version of source code can be found here: https://github.com/iDEP-SDSU/idep/. Note that all files need to be unzipped to the same folder and this line in server.R needs to be changed accordingly: # relative path to data files datapath = "../" For questions, please contact us http://ge-lab.org or https://twitter.com/StevenXGe

This is in support of our paper published in BMC Bioinformatics 2018: iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data Steven Xijin Ge1,*, Eun Wo Son1, and Runan Yao1