Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

ProteinCartography validation using deoxycytidine kinase accompanying data

Authors: Arcadia Science;

ProteinCartography validation using deoxycytidine kinase accompanying data

Abstract

This repository contains data accompanying the pub "Structure-based protein clustering sometimes, but not always, provides insight into protein function" (doi: https://doi.org/10.57844/arcadia-a757-3651). In the pub, we use the deoxycytidine kinase family to evaluate the results of a tool designed for structure-based clustering. We utilized data from the literature and data that we obtained for five enzymes (found in the table below). There are three folders containing ProteinCartography data, enzyme activity analysis data, and purification data. The ProtienCartography data contains all of the data produced by running ProteinCartography, including the maps, clustering information, and all of the structures used in the analysis. The enzyme activity analysis data contains enzyme activity data that we obtained in the lab, as well as data obtained from the review "Non-viral deoxyribonucleoside kinases - diversity and practical use" (doi: https://doi.org/10.1016/j.jgg.2015.01.003). The purification data folder contains chromatograms, gels, and western blots from the purification of the following enzymes. UniProt ID Annotation Organism A0A4Y1QVV5 P-loop containing nucleoside triphosphate hydrolases superfamily protein (pd-dNK) Prunus dulcis (almond) A0A3P6ASY1 Deoxynucleoside kinase domain-containing protein (bc-dNK) Brassica campestris (field mustard) A0A2A5BCG8 Deoxynucleoside kinase domain-containing protein (rb-dNK) Unidentified Rickettsiales bacterium A0A7J5YK87 Deoxynucleoside kinase domain-containing protein (dm-dCK) Dissostichus mawsoni (Antarctic toothfish) P27707 Deoxynucleoside kinase Homo sapiens (human)

Related Organizations
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average