Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
versions View all 6 versions
addClaim

The PODER cross-ancestry long-read RNA-seq dataset

Authors: Fairlie Reese; Pau Clavell-Revelles;

The PODER cross-ancestry long-read RNA-seq dataset

Abstract

Table legends: column_descriptions.docx: Extended description of columns in selected tables. 00_sample_metadata: Sample and experimental metadata pertaining to each LR-RNA-seq sample. 01_uma_gtf: Unfiltered merged annotation (UMA) GTF for all spliced intron chains discovered by each of the tools. 02_uma_mt: Metadata table for SQANTI QC, Recount3 support, protein prediction, and other relevant characteristics for each transcript in the UMA annotation used to filter transcripts. 03_poder_gtf: Final PODER GTF, including predicted CDSs for novel transcripts and annotated CDSs for known transcripts. 04_poder_mt: Metadata table for SQANTI QC, Recount3 support, protein prediction, and other relevant characteristics for each transcript in PODER. 06_poder_t_counts: PODER transcript counts in each sample as quantified by lr-kallisto. 07_poder_g_counts: PODER gene counts in each sample as quantified by lr-kallisto. 08_mage_t_counts_poder: Transcript counts for the MAGE RNA-seq dataset computed using the PODER annotation with kallisto. 09_mage_t_counts_gencode: Transcript counts for the MAGE RNA-seq dataset computed using the GENCODE annotation with kallisto. 10_mage_t_counts_enh: Transcript counts for the MAGE RNA-seq dataset computed using the Enhanced GENCODE annotation with kallisto. 11_astu: Allele-specific transcript usage results. 12_ase: Allele-specific expression results. 13_mage_tau: Tau values for Enhanced GENCODE transcripts computed on the MAGE RNA-seq dataset. 14_gwas_enrichments: GWAS enrichment results for ASTU genes overlapping GWAS genes. 16_inter_catalog_overlap: Boolean detection of transcripts across PODER, annotations (GENCODE, RefSeq) and other RNA-seq / LR-RNA-seq-derived transcript catalogs (CHESS, GTEx, ENCODE4). 17_personalized_hg38: Isoforms and their intron chains detected using personalized-GRCh38s. 18_enh_gencode: Enhanced GENCODE GTF with novel transcripts from PODER added to all annotated transcripts from GENCODE v47

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average