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ZENODO
Software . 2024
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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Snk: A Snakemake CLI and Workflow Management System

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 25 Nov 2024Publisher:Zenodo
Authors: Wirth, Wytamma; Mutch, Simon; Turnbull, Robert;

doi: 10.5281/zenodo.14214901 , 10.5281/zenodo.14214902

Snk: A Snakemake CLI and Workflow Management System

Abstract

Snk (pronounced "snek") is a workflow management tool designed to simplify the use of Snakemake workflows by dynamically generating command-line interfaces (CLIs). Snk allows complex Snakemake workflows to be used as modular components in larger systems that can be executed and managed from the command line with minimal overhead. This enables researchers and developers to integrate and manage sophisticated workflows seamlessly. Snk significantly improves the interoperability and accessibility of Snakemake workflows, making it easier to use and share computational pipelines in various research fields.

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    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average