fMRIStroke is a functional magnetic resonance imaging (fMRI) dataquality checks and preprocessing pipeline tailored to stroke data. It is designed to provide an easily accessible,interface that is robust to variations in scan acquisitionprotocols and that requires minimal user input, while providing easilyinterpretable and comprehensive reports.It uses fmriprep outputs derivatives to generatenew quality checks plots for stroke patients when lesion masks are available andcomputes new confounds like signals in lesion masks, and ICA based confounds (as proposed in [Yourganov2017]_). The fMRIStroke pipeline uses a combination of tools from well-known software packages, including ANTs, FreeSurfer, Rapidtide and Nilearn. In summary this tool allows you to easily do the following: - Generate preprocessing quality reports specific to stroke patients, with which the user can easily identify outliers.- Receive verbose output concerning the stage of preprocessing for each subject, including meaningful errors.- Automate and parallelize processing steps, which provides a significant speed-up from manual processing or shell-scripted pipelines. Acknowledgements----------------This work makes great use of the work by the NiPreps Community and the work done by rapidtides authors.