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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Efficient globin production during terminal erythropoiesis depends on the synergistic action of TENT5C poly(A) polymerase and LARP4/5

Authors: Mazur, Michał; Gumińska, Natalia; Brouze, Aleksandra; Cysewski, Dominik; Mleczko-Sanecka, Katarzyna; Niklewicz, Marta; Kusio-Kobiałka, Monika; +1 Authors

Efficient globin production during terminal erythropoiesis depends on the synergistic action of TENT5C poly(A) polymerase and LARP4/5

Abstract

Red blood cell development is a unique process where reduced transcriptome and proteome complexity facilitates vast hemoglobin production. Here, we describe the cooperative role of cytoplasmic poly(A) polymerase TENT5C and the poly(A) tail-protecting LARP4/5 RNA-binding proteins in ensuring proper hemoglobin production. TENT5C catalytic mutant knock-in mice display microcytic hypochromic anemia resembling constitutive knockout. TENT5C counteracts gradual globin mRNA deadenylation during erythropoiesis. In the late stages, TENT5C dysfunction leads to globin poly(A) tail shortening and a drastic reduction of mRNA levels in reticulocytes. Proteomic experiments revealed transient but specific association of TENT5C with LARP4/5. Indeed, LARP4/5 depletion leads to downregulation and poly(A) tail shortening of globin mRNAs. Furthermore, lack of TENT5C catalytic activity is accompanied by compensatory upregulation of LARP4/5. Finally, the importance of precise regulation of globin poly(A) tails by deadenylation and re-adenylation is highlighted by the destabilization of TENT5C by CCR4-NOT deadenylase complex-associated E3 ubiquitin ligase CNOT4. This repository contains supplementary data accompanying related publication. The uploaded files contain following data: Supplementary Data 1 DRS of E14.5 fetal livers, poly(A) profiling statistics. Supplementary Data 2 (A) All identified proteins in the TurboID assay (B) Overlap between 3 replicates (C) Statistically significant GO terms for overlapping proteins with average specificity > 0. Supplementary Data 3 (A) Overview of used input and method details used in degronopedia analysis (B) Identified degron motifs (C) Degron conservation (D) Evolutionary conservation of TENT5C aa sequence scored by ConSurf (The table shows the residue variety in % for each position in the query sequence, each column shows the % for that amino acid found in position in the MSA). Supplementary Data 4 Key resources table. Supplementary Data 5 Oligonucleotides used in the study. Supplementary Resource 1 TurboID assay MS/MS raw data, each file in the archive corresponds to a biological replicate of either WT (control) or Tent5c-EGFP.

Keywords

Erythropoiesis; Cytoplasmic polyadenylation; Deadenylation; Hemoglobinization; TENT5C; LARP4; LARP5; CNOT4; CCR4-NOT

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average