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SKESA - Strategic Kmer Extension for Scrupulous Assemblies

Name: SKESA - Strategic Kmer Extension for Scrupulous Assemblies
Keywords: contamination, sequence quality, Illumina reads, de-novo assembly, DeBruijn graph

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 16 Jul 2018Publisher:Zenodo

Authors: Souvorov, Alexandre; Agarwala, Richa; Lipman, David;

doi: 10.5281/zenodo.1313203 , 10.5281/zenodo.1407162 , 10.5281/zenodo.1313204

SKESA - Strategic Kmer Extension for Scrupulous Assemblies

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Abstract

SKESA is a DeBruijn graph based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina.

Keywords

contamination, sequence quality, Illumina reads, de-novo assembly, DeBruijn graph

1 Research products, page 1 of 1

Supplementary Files for thesis titled "Visual-analytics-driven bioinformatics methods for the analysis of biomolecular data"
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