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QUAST: quality assessment tool for genome assemblies

Authors: Gurevich, Alexey; Mikheenko, Alla; The QUAST team;

QUAST: quality assessment tool for genome assemblies

Abstract

QUAST stands for QUality ASsessment Tool. It evaluates genome/metagenome assemblies by computing various quality metrics (more than 50 in the current release). The current QUAST toolkit includes the general QUAST tool for genome assemblies, MetaQUAST, the extension for metagenomic datasets, QUAST-LG, the extension for large genomes (e.g., mammalians), and Icarus, the interactive visualizer for these tools. The QUAST package works with and without reference genomes. However, it is much more informative if at least a close reference genome is provided along with the assemblies. The tool accepts multiple assemblies, making it suitable for comparison.

Keywords

software, genomics, genome assembly, bioinformatics, visualization

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average