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License: CC BY
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Image . 2024
License: CC BY
Data sources: Datacite
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Supplemental_Data_S1 for "Kmer Manifold Approximation and Projection for visualizing DNA sequences"

KMAP visualization for HT-SELEX dataset compared with MEME, UMAP,tSNE,MDS,PCA
Authors: Fu, Chengbo;

Supplemental_Data_S1 for "Kmer Manifold Approximation and Projection for visualizing DNA sequences"

Abstract

This dataset includes the results generated by KMAP software applied to the htselexdata dataset. Each folder within the dataset contains outputs from multiple dimensionality reduction techniques, including KMAP, UMAP, t-SNE, and MDS. Additionally, motifs and logos have been derived using both KMAP and MEME methods. This data provides insights into motif patterns and structures, which can be beneficial for further bioinformatics and computational biology analyses.

Related Organizations
Keywords

motif, DNA visualization, bioinformatics, kmer

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average