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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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SDDF Energy Dataset

SDDF-Energy-2025Q1
Authors: Altunyan, Vahagn; Ghukasyan, Tsolak; Bughdaryan, Aram; Aghajanyan, Tigran; Smbatyan, Khachik; Papoian, Garegin; Petrosyan, Garik;

SDDF Energy Dataset

Abstract

This conformational energy dataset, developed as part of the Smart Distributed Data Factory (SDDF) project, contains over 2.75 million molecular conformations based on drug-like molecules sourced from the ENAMINE database. Energies were calculated using DFT with the ωB97x density functional and the 6–31G(d) basis set. The conformations were generated from SMILES using RDKit, MMFF94 optimization, and molecular dynamics (MD) simulations, providing a diverse set of molecular structures and energy states. RDKit Conformations: 1,123,693 RDKit + MMFF94 Optimized: 1,151,936 MD-Generated: 483,279 This dataset serves as a benchmark for energy prediction models, with training (638,617 examples), validation (134,732 examples), and test subsets (24,890 examples) created using a strict scaffold-based split to ensure no overlap and less than 70% similarity between the training and test sets. Dataset contents: data.tar.gz: contains the conformations in Structured Data File format, grouped into separate folders based on the molecule ID. Each conformation's label is provided within its SDF file as a property named "energy". INDEX.smi: specifies the molecule IDs and their corresponding SMILES. SOURCES.csv: specifies the conformation generation method for each conformation. SDDF_train.tsv, SDDF_validation.tsv, and SDDF_test.tsv specify the molecule IDs and conformations for each subset of the benchmark. A detailed description is provided in the accompanying paper.

Keywords

Artificial intelligence, Drug discovery, conformational energy, Machine learning, ωB97X/6-31G(d), Smart Distributed Data Factory, Quantum chemistry, DFT

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
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