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Pergola: Boosting Visualization And Analysis Of Longitudinal Data By Unlocking Genomic Analysis Tools - D. Melanogaster Behavior Dataset Obtained With Jaaba

Authors: Espinosa-Carrasco, Jose; Erb, Ionas; Dierssen, Mara; Notredame, Cedric;

Pergola: Boosting Visualization And Analysis Of Longitudinal Data By Unlocking Genomic Analysis Tools - D. Melanogaster Behavior Dataset Obtained With Jaaba

Abstract

Dataset contains Drosophila melanogaster behavioral annotations of chasing. The dataset is formed by 20 GAL4 line flies group from a TrpA activation screen with increased propensity to chasing and by 19 pBDPGAL4U line (control) flies group. Ctrax motor trajectories derived from the original video-recordings (1000 seconds) were downloaded from this link and used to obtain the chasing behavioral annotations using JAABA 10.1038/nmeth.2281: The data set consist in: - a "mappings" folder containing all the mappings used by the pergola in the pipeline to convert data. - a "perframe_TrpA" folder containing mat files with three Ctrax derived variables (dnose2ell, dtheta and velmag) from the motor trajectories of the GAL4 line. - a "perframe_pBDPGAL4" folder containing mat files with three Ctrax derived variables (dnose2ell, dtheta and velmag) from the motor trajectories of the control line. - a "scores" folder including the JAABA chasing annotations in two mat file one for each fly line.

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Keywords

nextflow, behavioral computational analysis, pergola, reproducibility

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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