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Article . 2024
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Dataset for structural and functional analysis of Bacillus thuringiensis Vip3Aa insecticidal protein binding and toxicity

Authors: Infante, Oscar; Gómez, Isabel; Pélaez-Aguilar, Angel E; Verduzco-Rosas, Luis A; García-Suárez, Rosalina; García-Gómez, Blanca I; Wang, Zeyu; +4 Authors

Dataset for structural and functional analysis of Bacillus thuringiensis Vip3Aa insecticidal protein binding and toxicity

Abstract

This dataset contains raw and processed data associated with the research article by Infante O et al., "Insights into the structural changes that trigger receptor binding upon proteolytic activation of Bacillus thuringiensis Vip3Aa insecticidal protein." The dataset includes results from ELISA assays (ELISA assays.zip), and image-based segmentation for cell mortality analyses (Imaging assays.zip), corresponding to Figures 1D, 2, 3C, 4C, and S1 from the paper. The dataset is organized into two zip files: Absorbance Data (xlsx format): This file contains the results of ELISA binding saturation assays related to Figures 1D, 3C, 4C, and S1. Data Figure 1D: ELISA binding saturation assay data for Vip3Aa protoxin and activated toxin binding to S. frugiperda BBMV. Data Figure 3C: ELISA binding saturation data for Vip3Aa fragments binding to S. frugiperda BBMV. Data Figure 4C: ELISA binding saturation data for Vip3Aa mutants binding to S. frugiperda BBMV. Data Figure S1: ELISA data showing the recognition of Vip3Aa protoxin and activated toxin by anti-Vip3Aa antibody. Images and Data for Figure 2 (images and text files): This file contains the source images, processed images, data files, and plots used to create Figure 2. These data are generated using the Jupyter notebooks available at https://github.com/adanog/Vip3Aa. Source Images: Raw images of Sf9 cells captured 72 h post-treatment with Vip3Aa or Cry1Fa protoxin or activated toxin. Segmented Images: Processed images of cells segmented using Cellpose3. Data Files: Text files containing data on cell mortality and cell size changes, based on the reduction in cell count and increases in cell size relative to the controls. Plots: Graphical representations of cell mortality and size changes used in Figure 2. Scripts (Available in GitHub as Jupyter Notebooks): The Jupyter notebooks for cell segmentation and analysis, which generate the images, data, and plots for Figure 2, are available at: https://github.com/adanog/Vip3Aa. The scripts include: cyto3_edited.ipynb: Segments and outlines cells in the source images, producing segmented images. Dose_response_analysis.ipynb: Analyzes cell mortality and generates the associated data files and plots. Plot_dose_response.ipynb: Calculates changes in cell size and generates the data files and plots for cell swelling analysis.

Keywords

Bacillus thuringiensis; Vip3A toxin, binding epitope, protoxin activation; receptor binding

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